rs30075552 SNP Detail

Summary

• ID
  rs30075552
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115436510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGCTTC CGAATCCTAG
  ATGCTGAAGC AGCCTCCTCC GTCGATGCAG CTGTGACTTT GGATGTCTCC TTCTCTTTAA
  CTGCCGCTTT GATACCGCTG CCTTTTGAAG TCTCTTTTTA TATATTTTGT GATTTACTTG
  GGCAATGGAT GGAACTTGCT GTGGCTGCTG TTTACCATCG CATTGGGCTC TGCAGTTTGG
  K
  AAGGCAAAAG GCAGGTCCGC GGTCGCCCTC TCCTGGTGAA GCCGCGGAAC TTCGGAGAGG
  AGATCTGAGA AGATTAATTT TGTTTGGTTC AGCAACTTTT TTTATTAAAG TTTACCCCCT
  TAAATATACT CATCAAGCTT TAACATTAGC CAGAGTCTCT TGGAGGACTC CTAAAAGCTA
  GAAGCCTCGG TTCCACCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46910787	NES10698190	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T		G	G	T		G
ss320892525	CHEV_3_115345779	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30075552					SNP	G	G	G	G	G	G	G	G	T	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46910787	NES10698190	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115436510 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	1265 bp upstream
Rr65099	regulatory region 65099	1710 bp distal
Rr65100	regulatory region 65100	1891 bp proximal
Rr367536	regulatory region 367536	423 bp downstream
Rr367537	regulatory region 367537	within coordinates
Rr397953	regulatory region 397953	1631 bp upstream
Tssr35264	transcription start site region 35264	1330 bp upstream
Tssr35265	transcription start site region 35265	1307 bp upstream