rs30077269 SNP Detail

Summary

• ID
  rs30077269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86763100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGGCAGC GTGCGCTGCC
  AACAGAGCCC AGCCCCTTCT CCTAAGAAGC GTGCCTGTGA CTAGCTGGCC TGTCCTCGGC
  AGTAGAGGCC CAGATGGGCA GGGCGATTTG AAATGTCAGA TTCTGTGGCC ACGCGACCGT
  TACCTGTGCA CCCTCAGCTC CTTGAGGCTG CTCCACTAGT CTCAGTTACA ACGGGGAGCC
  R
  AGTGGGCAGG TAATTCGAGC CGCTTTAGCC TTAAAGCAAT ACTGAGGTAT GCGGTATAGA
  CAAGTAGCAA AGCAATTAGC TGAATGCCAG ATTACACTCG TCTTGTAATC ATTTGCACCC
  TTAAACTGTA ATTTTTGCCA TTTAAATATG TCGGAACGTC TTATATTATT TGAATGTCGA
  GTGTTATTTG CATGGGATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46370703	mCV24288049	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136762481	ENSMUSSNP3559828	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss323058456	CHEV_9_86775882	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30077269					SNP	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86763100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	644 bp distal
Rr684154	regulatory region 684154	108 bp distal
Snap91	synaptosomal-associated protein 91	393 bp upstream
Tssr90794	transcription start site region 90794	675 bp upstream
Tssr90795	transcription start site region 90795	635 bp upstream
Tssr90796	transcription start site region 90796	580 bp upstream
Tssr90797	transcription start site region 90797	563 bp upstream
Tssr90798	transcription start site region 90798	545 bp upstream
Tssr90799	transcription start site region 90799	388 bp upstream
Tssr90800	transcription start site region 90800	335 bp upstream