rs30077385 SNP Detail

Summary

• ID
  rs30077385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63691030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTCTGTGTC TCTGTCCCTC TCTGTCTCTG TCTCTGTCTC TGTCTCTGTC TCTCTCACTC
  AAAAAGACCT AACTCTGGAG AAGTCTGAGG AACCCCAAGT TCAGTCACCT ATGCTAGGGT
  GTCCTCAGGA AACTACTAAG TGAGAAGAGC TGGCCAACTA ATTGCTCTGT TCCTGTTCTG
  CTTTGGAGTG TTTGTAATGA GCTAACTGCA GATCCACCCA CCCATCCATC CATCCATCCA
  TCCATCCATC CATCCACCCA TCCACCCATC CATCCACCCA CCCATCCATC CATCCATCCA
  Y
  CCATCCATCC ATCCATCCAT CCATTTACTC ATTCAGAAAG CTCGGTATTT TTATTGTCTT
  ACTTGAGAAA AACCATATGT ATAGGACATG GTAAATGGGT GACACTCAGT GGTATAAACT
  CACAAAAACA ACCCAGGGCA CCAGCAATAA AAGCCAAGCC AAGGCAGGAT CACTACGGCC
  CATGGAAGGA GTGGGAAGAG TTCGTGGATC TGTCCGAGTC CTGTGCTTTG GGGAGACTTT
  GAGTAAACAA CAGGGCTCAG CAATTTGGCT GGGTGCATGG CATGGGTTGT CAGGGTTAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46370786	mCV22786525	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss136557745	ENSMUSSNP838705	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs30077385					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63691030 () rs orientation: forward

Symbol	Name	Function Class
D9Mit31	DNA segment, Chr 9, Massachusetts Institute of Technology 31	565 bp proximal
D9Mit245	DNA segment, Chr 9, Massachusetts Institute of Technology 245	1149 bp proximal
Gm68073	predicted gene, 68073	within coordinates
Rr2253	regulatory region 2253	within coordinates
Rr2254	regulatory region 2254	210 bp proximal
Rr196447	regulatory region 196447	1430 bp distal