rs30078374 SNP Detail

Summary

• ID
  rs30078374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115509275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT TCCCCTCTCT CAGCTGACCG
  M
  AAAGCCAGGC GGTGTGCCCC AGATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46912026	NES10694519	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A	C	A
ss135664481	ENSMUSSNP4447989	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30078374					SNP	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912026	NES10694519	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115509275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	78 bp distal
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	306 bp upstream
S1pr1	sphingosine-1-phosphate receptor 1	571 bp upstream
Tssr31332	transcription start site region 31332	454 bp downstream
Tssr35276	transcription start site region 35276	1879 bp upstream
Tssr35277	transcription start site region 35277	1820 bp upstream
Tssr35278	transcription start site region 35278	829 bp upstream
Tssr35279	transcription start site region 35279	813 bp upstream
Tssr35280	transcription start site region 35280	763 bp upstream
Tssr35281	transcription start site region 35281	707 bp upstream
Tssr35282	transcription start site region 35282	679 bp upstream
Tssr35283	transcription start site region 35283	564 bp upstream