rs30078376 SNP Detail

Summary

• ID
  rs30078376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115509385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAAAGT GGCTTTCCCC
  GGGTGCACGG TGAAGTGGGC CAGTGCTGTG CTTGATGTTG GACCGGGGGT TCCCCTCTCT
  CAGCTGACCG CAAAGCCAGG CGGTGTGCCC CAGATTCTGG GAAGCTCAGA GGCCTTTGAG
  GAGGTGGGCT GCTGCCCTGG CCTCAGAGAT TTAAACAATC CAGCAGCAGT TCAGGAATGT
  Y
  CACAGGGGAA AGAGGTTGCC TGTCCTTTCA CTGGCCAGTG CCTACAGCCC CCTGCCTAAA
  GCTGGACCCC TCTTCTCTCC CTGTCTACGT AGAGATAACT AAGAGATCCC CAAATCTAAG
  GAATTGCACC TTGTCCACAT TTTTCTACTG TTAGATAATG CTAGATTGAG GCTGAAGAGG
  CCTTGGTCAG ATTTGTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46912029	NES10694520	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30078376					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912029	NES10694520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115509385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	188 bp distal
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	196 bp upstream
S1pr1	sphingosine-1-phosphate receptor 1	681 bp upstream
Tssr31332	transcription start site region 31332	564 bp downstream
Tssr35276	transcription start site region 35276	1989 bp upstream
Tssr35277	transcription start site region 35277	1930 bp upstream
Tssr35278	transcription start site region 35278	939 bp upstream
Tssr35279	transcription start site region 35279	923 bp upstream
Tssr35280	transcription start site region 35280	873 bp upstream
Tssr35281	transcription start site region 35281	817 bp upstream
Tssr35282	transcription start site region 35282	789 bp upstream
Tssr35283	transcription start site region 35283	674 bp upstream