rs30078381 SNP Detail

Summary

• ID
  rs30078381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115509510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGCCT TTGAGGAGGT
  GGGCTGCTGC CCTGGCCTCA GAGATTTAAA CAATCCAGCA GCAGTTCAGG AATGTCCACA
  GGGGAAAGAG GTTGCCTGTC CTTTCACTGG CCAGTGCCTA CAGCCCCCTG CCTAAAGCTG
  GACCCCTCTT CTCTCCCTGT CTACGTAGAG ATAACTAAGA GATCCCCAAA TCTAAGGAAT
  Y
  GCACCTTGTC CACATTTTTC TACTGTTAGA TAATGCTAGA TTGAGGCTGA AGAGGCCTTG
  GTCAGATTTG TCTGAGTAGC AGATGGAGGC CTTTATGCCT TGTCTGTCTG TCCTTCTGTT
  AAAAAGTGGT TCCACCCAAG TCCCCTGTTC TCACTGCCTT CCCACCCTGA GCAGATGTGA
  TCACAAAACT TCCTCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46912035	NES10694522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30078381					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912035	NES10694522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115509510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	313 bp distal
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	71 bp upstream
Rr583585	regulatory region 583585	828 bp distal
Rr583586	regulatory region 583586	299 bp distal
Rr583587	regulatory region 583587	702 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	806 bp upstream
Tssr31332	transcription start site region 31332	689 bp downstream
Tssr35278	transcription start site region 35278	1064 bp upstream
Tssr35279	transcription start site region 35279	1048 bp upstream
Tssr35280	transcription start site region 35280	998 bp upstream
Tssr35281	transcription start site region 35281	942 bp upstream
Tssr35282	transcription start site region 35282	914 bp upstream
Tssr35283	transcription start site region 35283	799 bp upstream