rs30078740 SNP Detail

Summary

• ID
  rs30078740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:71058213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAACAA GAGAAACTTG
  GAAGATGCCT GCCTATTATA AATTCACTAG TTGATCACTT AGCAAGGAGC ATGTTCACAG
  AGGTGGAAGG CACGTTTCTC CCACGTGCCT TTTTGGCAGG AGCAAGGACC AAAGATTTCG
  CTTTTGTGGA GGTTTCTTAT AGCAGCGAAA ACTGTAGCTG AAAGTGGCGC TTTGAGATGC
  Y
  CACTCAAGAT AATCCTGAAG TTTGGGACGC TCTGGCCACT ACACTCAACA AATCCCAAAA
  TGATCACTCA AGTTAGCCGA TCCTGAGAAA TGACATCTGA TAAACAAACT GTATGCGGAG
  AGCAGAAAGA GCTTAGCAAA AGGAAAAGAC TCGGTGACCT AAGGCCTCGG GAACACTGTC
  GAGCTGTAGA TCGTTGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46369931	mCV23567728	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss50734972	NES14244212	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T	C		T	T	C	C
ss136612559	ENSMUSSNP1442456	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30078740					SNP	C	C	T	T	T	C	T	T	C	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50734972	NES14244212	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:71058213 () rs orientation: forward

Symbol	Name	Function Class
Aqp9	aquaporin 9	within coordinates
Gm32714	predicted gene, 32714	within coordinates
Rr682494	regulatory region 682494	450 bp distal