rs30078746 SNP Detail

Summary

• ID
  rs30078746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37568546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTGTGGT AGTTTGTGGG TCCACAAGGA AATACTCTTA
  ATAGAAGTTG TTGGCCTTCT GTAAGGGTGG ATAAGTATTT AAAGCTGTAG ATTTATCTCT
  R
  AAGACTAGTT TTTAGTATCC CTCTTAAATT TTATATATAT GTATATGTAT ATATGTATAT
  ATGTGTGTGT ATATATTTCT AAAAGAAACC ATCTTTATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46911638	NES10798577	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	A		A	G	G	A		G
ss320710560	CHEV_3_37413319	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30078746					SNP	G	A	G	G	G	A	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911638	NES10798577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37568546 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Rr575494	regulatory region 575494			1142 bp proximal
Rr575495	regulatory region 575495			1226 bp proximal
Rr575496	regulatory region 575496			1331 bp proximal