rs30078764 SNP Detail

Summary

• ID
  rs30078764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60960176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCCTCT TTCCATGCTG
  TGCCGGCCTC AAGTCTGAGC TTTGCTTTTC CACAGGAATG CACAAGTGAG GCCCCAAGGG
  TCACAGCTGT CACAGCCTCT GATGCTGCTC ATCGCGGCTT TGTCGCCTGA CCGGAGGACC
  TCAAGAGCGC GCTCCTTACA TGCACCTGTG CGTGGTTTTG ACAGCTGTGG AAGGCGCATC
  Y
  CCTTTCGACC CAACCTTTAA CTTTTTGTTT CTGACCTTTT TGTTGTGCCT GTGGTGACAA
  CATGTGTTGC TTAATGAGCC ATTTTAAAGT GCACACAGCT CAGGGGCATG TAGTATGTTC
  ACCGTGTGTG CAGCCACCAA TTCTCTGGTT ATACAACATT TTTTTTTTTT TAGAGACAAA
  AGACCCAACG TGAAGGACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46370227	mCV25242625	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136536956	ENSMUSSNP1886496	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322978068	CHEV_9_60900701	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30078764					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60960176 () rs orientation: forward

Symbol	Name	Function Class
Gm33699	predicted gene, 33699	within coordinates
Gm39348	predicted gene, 39348	within coordinates
Rr401422	regulatory region 401422	1454 bp upstream
Rr680430	regulatory region 680430	within coordinates
Rr680431	regulatory region 680431	1094 bp proximal
Tssr85498	transcription start site region 85498	1743 bp upstream