rs30078903 SNP Detail

Summary

• ID
  rs30078903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113171296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT AACATGCTCA TTGAGAGACA
  Y
  GTTTACGTTC AGGAATTTTC ACAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39149001	mCV23842490	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30078903					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113171296 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	349 bp upstream
Cpgi6107	CpG island 6107	134 bp proximal
Gm61413	predicted gene, 61413	1660 bp downstream
Mir449c	microRNA 449c	1221 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	1221 bp proximal
Rr486471	regulatory region 486471	127 bp proximal
Rr486472	regulatory region 486472	1342 bp proximal
Tssr121164	transcription start site region 121164	1708 bp downstream
Tssr121165	transcription start site region 121165	465 bp upstream