rs30079049 SNP Detail

Summary

• ID
  rs30079049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57175094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA CCAAAACATC ACACTCAGAA
  Y
  CTTCAATCTT CCTAGAATTT AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46370900	mCV23499344	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss136518008	ENSMUSSNP1180090	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322971884	CHEV_9_57115618	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30079049					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57175094 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	272 bp upstream
Rr679626	regulatory region 679626	98 bp distal
Rr679627	regulatory region 679627	746 bp proximal
Tssr89774	transcription start site region 89774	1993 bp upstream