rs30079720 SNP Detail

Summary

• ID
  rs30079720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115474844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGTCCT GGCTGCCAAG
  CTTGATGACC TGAGTTCAAT CCTCAAGACC CACATCTGCA TCTTCTTGGT CTGTAACAGG
  AGCATTAGTC TCTCATTTTC CACATTTATA GGATGAACCT TGGGGGTATC GCCTGACCTT
  CTCCATTACA GCATTCCATT CCCCCACAAG TCAGCAATGC CATGTGAGAG ATTCTCCGTG
  Y
  ATTAATGATA GATAGATAGA TATTCAATGA CATGAGAAAT AATCATGGTG TGTTTTTAGG
  GATCTAGTAA ACCCCCACTG AGCTTGAATT TATCCAAATA TGTATTTGTT TTCTAGGTCC
  CACAAAGCTC CAGTCTAACA GAAGGCCACA TGTTACTTGG TCTCTGGGGA TCAACTCAAA
  CCACATGTTC CTTAAACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46911498	NES10696145	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30079720					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911498	NES10696145	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115474844 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	within coordinates
Rr397954	regulatory region 397954	within coordinates
Rr583574	regulatory region 583574	84 bp proximal
Rr583575	regulatory region 583575	1159 bp proximal
Tssr31331	transcription start site region 31331	1948 bp upstream
Tssr35267	transcription start site region 35267	1486 bp downstream