rs30080018 SNP Detail

Summary

• ID
  rs30080018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75208960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGA AACATAAACC AAGATCTGAT
  Y
  TTCAGCTCGC GCTCGTGCGC GCGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46371099	mCV25135720	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136640226	ENSMUSSNP2863033	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323007833	CHEV_9_75149485	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30080018					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75208960 () rs orientation: forward

Symbol	Name	Function Class
Myo5c	myosin VC	within coordinates
Rr197408	regulatory region 197408	1960 bp distal
Rr197409	regulatory region 197409	641 bp proximal
Rr197410	regulatory region 197410	1241 bp proximal
Rr212264	regulatory region 212264	1978 bp distal