rs30080213 SNP Detail

Summary

• ID
  rs30080213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGATGCC TATTTTGATC
  TCTTGTTCTA GAAAGAACTC ATAGGGGCTT ACAAAGATAG TTACCAAGGT AACATGATAA
  GGGGCGGAGG TACTGCTGAA TTCTGTGAAG CCTGGCAAAA GATTTGGCAG CCATCGTGCA
  ACCTGGACCT TCCAGCTCTG CTCTTCCCTT TCTGTGTGTC TTCCCTTGCT CTCAGTTTTT
  Y
  GGGTCTCTGG TGGGCTATGG CACAAGCCCC TCTAGGTGTG GTTGGGGGAA GCAAATGTTC
  AGCCTTAGTT TCTTCACCTG TCAAATGGAA CTACTGGAGA TTATTAGATG GGGGCCGTGA
  GTGCTGAGAG CCTGGCGTGT GGGGGCAGAC TCTCACAGGG CGGGGCTGCT GTCCTTCTGT
  GTGAGTGTGT GTTGCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46370157	mCV25163680	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss52013356	NES15030295	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	T	T	C	C	T	C
ss136411225	ENSMUSSNP1220881	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30080213					SNP	T	T	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013356	NES15030295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315306 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	1906 bp distal
Rr195107	regulatory region 195107	1295 bp proximal
Rr206351	regulatory region 206351	1494 bp proximal
Rr209195	regulatory region 209195	695 bp proximal
Tssr84783	transcription start site region 84783	1434 bp downstream
Tssr84784	transcription start site region 84784	1382 bp downstream
Tssr84785	transcription start site region 84785	850 bp downstream
Tssr84786	transcription start site region 84786	819 bp downstream
Tssr84787	transcription start site region 84787	798 bp downstream
Tssr84788	transcription start site region 84788	767 bp downstream
Tssr84789	transcription start site region 84789	740 bp downstream
Tssr84790	transcription start site region 84790	1927 bp upstream