rs30080433 SNP Detail

Summary

• ID
  rs30080433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96319143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGCCCTC CGGGAGGTAT
  TTCCCTGAGG AGACTGGAGA CAGAGGTGCA TGCCAAACAC CCACATTCCA TCAGTCTCCA
  GCTGAAAAAA TTAATTGCCT GCCCTTTATG CCATTTGTCT TCGGCATGTG AACTGCAGTC
  TCAGAGTGGG AGGGGAGGAG AGAACGGCAG GCAGCTTAGA GCGGGGGTTC AACCACGCTG
  R
  TCTCTTGGCT GCTCCTTTAA CTCCTGTGGT GACGGATCGG ATCGGAGCAT TAGTCTCTGG
  CATCAAAACA GTCTCTCGGT CCATGTGACC AGCACTGCCG TTGCCGCACT GTAAAGCCCA
  CAAGAATCGG CAGCCCACAG ACCCATCAGT GGAAGCTTTG TGTTTGCTTC GTGTGGGTTT
  GCTGGTGGCC TTTGGCATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46371295	mCV25429666	ABI	CRAMUS_MOUSE	f	SNP	G	A	A						A
ss61442171	NES16828184	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A	G	A	A	A		A	A	G	G		A
ss136832077	ENSMUSSNP1126378	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss323108976	CHEV_9_96337509	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30080433					SNP	G	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442171	NES16828184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96319143 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	within coordinates
Cpgi22164	CpG island 22164	413 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	590 bp upstream
Rr368835	regulatory region 368835	906 bp upstream
Rr684963	regulatory region 684963	100 bp proximal
Rr684964	regulatory region 684964	601 bp proximal
Rr684965	regulatory region 684965	727 bp proximal
Tssr90963	transcription start site region 90963	1071 bp downstream