rs30080497 SNP Detail

Summary

• ID
  rs30080497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115060204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCAGGA TCGCCCTCAG
  CTGTGTAGTG AGCCTGTGGC TTGTGGGAGT GGGCTAAGGA GTAGGGGGAA GAGTCAAGAG
  GCTTTATCTC CCATCCAGAG AACAGTGGAT GCTTAGTGAG TAGCCGGGAT TGAGTTTTTA
  ATGAAGATCC TATCTGTATG ATGCTAAGGG GTTATACGCA TTCAAATGCC CATAGCCAAT
  Y
  TGGACCAGTG GGCCCAGGTG TCCTACCTAC TCTCTTAGCA CCTTCTATGA GGATGGGTTG
  TTGGCTGTGG GGTGAGCAAG GGCACCCTAG TGACATGGAT GGGGGAGAGG GAACTTATGG
  ACAGGAGGTA GAAGCTGAGG CTGGTACTTG GGAAACTGCC TCGAAGGGTC TCCTTCCTGG
  GTGGGTGCTT CGCTCAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46370250	mCV23362070	ABI	CRAMUS_MOUSE	f	SNP		C						T		T
ss61227469	NES16843212	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T	T	T	T	T	C
ss137004568	ENSMUSSNP5000253	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30080497					SNP	C	C	T	T	T	C	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227469	NES16843212	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115060204 () rs orientation: forward

Symbol	Name	Function Class
2210411A11Rik	RIKEN cDNA 2210411A11 gene	1740 bp upstream
Osbpl10	oxysterol binding protein-like 10	within coordinates