rs30080644 SNP Detail

Summary

• ID
  rs30080644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115510224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTG GCAGAGATGG GTCACCAAAT
  Y
  TAAGTTGTCT TGCCTGTCTG CTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45554126	mCV24998876	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss46912053	NES10694356	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		C	C	C	C		C	C	C	C		C
ss135664496	ENSMUSSNP3960877	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320892958	CHEV_3_115419493	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30080644					SNP	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912053	NES10694356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115510224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	1027 bp distal
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	343 bp downstream
S1pr1	sphingosine-1-phosphate receptor 1	1520 bp upstream
Tssr31332	transcription start site region 31332	1403 bp downstream
Tssr35278	transcription start site region 35278	1778 bp upstream
Tssr35279	transcription start site region 35279	1762 bp upstream
Tssr35280	transcription start site region 35280	1712 bp upstream
Tssr35281	transcription start site region 35281	1656 bp upstream
Tssr35282	transcription start site region 35282	1628 bp upstream
Tssr35283	transcription start site region 35283	1513 bp upstream