rs30080646 SNP Detail

Summary

• ID
  rs30080646
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115510255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAGGTC TTTAAAGGGG
  AACTGTGCAC TTTGTTGTCC CAAGATGTGA TGGCCACTGT CCCATGAAGC AATGGAGTAG
  CATGGGCCGT TCTACCCATG AGCAATCCCT CAGCCCTGAG AGACCTGTAG ATTGTCCAGG
  TAGTATGTGG CAGAGATGGG TCACCAAATT TAAGTTGTCT TGCCTGTCTG CTCAAATGCT
  K
  TCAATCAGCT TAGAACTTCA CATTCCTTTC CTGAACAGAG GAGACTTCTG CACTTGGACT
  CCTTACATTT GTACTTCTGA TTGTACTTGT CTTTACATGT GCATAAAACT ATTACTAATG
  TATACAGTGT GTTCTTTTGT GGGAGGAGAG TGAAGCTCTC AAGCTTGGGT TATTCCACTT
  AGCTATGCAT CCATATCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46912056	NES10694357	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30080646					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912056	NES10694357	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115510255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	1058 bp distal
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	374 bp downstream
S1pr1	sphingosine-1-phosphate receptor 1	1551 bp upstream
Tssr31332	transcription start site region 31332	1434 bp downstream
Tssr35278	transcription start site region 35278	1809 bp upstream
Tssr35279	transcription start site region 35279	1793 bp upstream
Tssr35280	transcription start site region 35280	1743 bp upstream
Tssr35281	transcription start site region 35281	1687 bp upstream
Tssr35282	transcription start site region 35282	1659 bp upstream
Tssr35283	transcription start site region 35283	1544 bp upstream