rs30080666 SNP Detail

Summary

• ID
  rs30080666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:71882853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA GAGAGCCAAG GCTGGGCCTC
  S
  GACAGTGAAG TAGTTTGCTT GGAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39149215	mCV22798009	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss324424876	CHEV_13_71872182	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30080666					SNP	G	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:71882853 () rs orientation: forward

Symbol	Name	Function Class
Gm40999	predicted gene, 40999	within coordinates
Rr1731	regulatory region 1731	within coordinates
Rr277113	regulatory region 277113	1748 bp proximal
Rr280205	regulatory region 280205	825 bp distal
Rr284862	regulatory region 284862	within coordinates
Rr388677	regulatory region 388677	1273 bp upstream