rs30080805 SNP Detail

Summary

• ID
  rs30080805
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20789975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA TTAGAAGACC AAAGGCCTCC
  W
  ACCCCTTCTC TCTAGGGTCA CCTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39149014	mCV24006496	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss148771566	ENSMUSSNP2702610	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss324282847	CHEV_13_20697674	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30080805					SNP	T	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20789975 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Tssr118599	transcription start site region 118599	391 bp downstream
Tssr118600	transcription start site region 118600	344 bp downstream