rs30080948 SNP Detail

Summary

• ID
  rs30080948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66119877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTC CTCAGACAGA AGAAAAGCCC
  Y
  GTTTGAATGG CTGTGGGCCC TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46370360	mCV23541328	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss50723205	NES14247805	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T		T	C	C		C
ss136573620	ENSMUSSNP4769228	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss322988308	CHEV_9_66060402	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30080948					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50723205	NES14247805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66119877 () rs orientation: forward

Symbol	Name	Function Class
Dapk2	death-associated protein kinase 2	within coordinates
Rr401473	regulatory region 401473	165 bp downstream
Rr681677	regulatory region 681677	874 bp distal
Rr681678	regulatory region 681678	208 bp distal
Rr681679	regulatory region 681679	109 bp proximal