rs30080996 SNP Detail

Summary

• ID
  rs30080996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115475299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT GTAATGTCCC TGGAGAAAAT
  R
  TCTAGAAGGG AGAAAGAAGC AAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45440781	mCV23909701	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss46911507	NES10696150	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		A	A	A	G		G	A	A		A
ss135664064	ENSMUSSNP1022416	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320892809	CHEV_3_115384568	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30080996					SNP	G	A	A	A	G	A	G	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911507	NES10696150	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115475299 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	within coordinates
Rr397954	regulatory region 397954	182 bp downstream
Rr583574	regulatory region 583574	119 bp distal
Rr583575	regulatory region 583575	704 bp proximal
Tssr31331	transcription start site region 31331	1493 bp upstream
Tssr35267	transcription start site region 35267	1031 bp downstream