rs30080999 SNP Detail

Summary

• ID
  rs30080999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115475439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT TGTCCTGAAC TATCAAATCC
  Y
  GAGTCTTCTT TCTACCAGCA TTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45482912	mCV23909700	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss46911510	NES10696127	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		C	C	C	T		C	C		C
ss135664067	ENSMUSSNP3822980	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320892810	CHEV_3_115384708	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30080999					SNP	T	C	C	C	T	C	T	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911510	NES10696127	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115475439 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	within coordinates
Rr397954	regulatory region 397954	322 bp downstream
Rr583574	regulatory region 583574	259 bp distal
Rr583575	regulatory region 583575	564 bp proximal
Tssr31331	transcription start site region 31331	1353 bp upstream
Tssr35267	transcription start site region 35267	891 bp downstream