rs30081949 SNP Detail

Summary

• ID
  rs30081949
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37726228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAACCTATA AGCATATATG CTGCTGTGAT TTTTTTTTTC
  CATGACTGTT TATTTAGGTC TCTGGAACAT TTCTGCTTCC TTCTGGAATT CTTTACATTA
  K
  AGGCAAACCT ACTTTGGTCT GGTGCACTTA GGCCCTTTGC TGATGGACTA ATTCAGTCAG
  GCTAACGAAG AGACAAGCGG CTGCTGGCAA AAGGAAAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45459477	mCV25406331	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss46913129	NES10828259	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	G		G	T	G	G		G	G	G	G		G
ss134810634	ENSMUSSNP3319559	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
ss320711633	CHEV_3_37571001	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30081949					SNP	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913129	NES10828259	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37726228 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	641 bp upstream
Rr406863	regulatory region 406863	within coordinates
Rr575537	regulatory region 575537	150 bp proximal
Rr575538	regulatory region 575538	1537 bp proximal
Tssr33054	transcription start site region 33054	340 bp downstream