rs30082044 SNP Detail

Summary

• ID
  rs30082044
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115477150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACTGTTAC AATCTCAGCA ATTGAGAGGC CGAAGGAGGG
  AGATCATGAG TTGCAGACCA GCTTAGGCAA CATGGGAAGA ACCTGTCTCA AAGAAAGGGA
  K
  GTGACTCAGT TGATATTCTA CTTGCCTGAC CTGTTTTATG CCTTGAGTCC AGTTCCGAAT
  AGTTTATAAA CCAGCAAGGT AAAAGCAGGG AGATCAGAAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46911516	NES10696000	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30082044					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911516	NES10696000	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115477150 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	1378 bp downstream
Rr583574	regulatory region 583574	1970 bp distal
Rr583575	regulatory region 583575	within coordinates
Tssr31331	transcription start site region 31331	331 bp downstream
Tssr35267	transcription start site region 35267	808 bp upstream