rs30082046 SNP Detail

Summary

• ID
  rs30082046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115478291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CTTGTTCTAT ACGCCTTATT
  Y
  TTCAAACGTT TATTTATTAC TCTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45473922	mCV23909415	ABI	CRAMUS_MOUSE	f	SNP		T	C					T	C
ss46911519	NES10695925	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	T		C	C	C		C
ss135664079	ENSMUSSNP723181	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320892817	CHEV_3_115387560	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30082046					SNP	T	T	C	C	C	T	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911519	NES10695925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115478291 () rs orientation: forward

Symbol	Name	Function Class
Rr583575	regulatory region 583575	1080 bp distal
Tssr31331	transcription start site region 31331	1472 bp downstream
Tssr35267	transcription start site region 35267	1949 bp upstream