rs30082048 SNP Detail

Summary

• ID
  rs30082048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115478362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG TTCCTGCAAG AGTGCACATG
  Y
  GGAGGGCCAG GGACAATTTG TAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45501781	mCV23909414	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss46911522	NES10695927	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	C		T	T	C		T
ss135664082	ENSMUSSNP283348	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss320892818	CHEV_3_115387631	CHEVERUD	SCREENING_POP	f	SNP													T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30082048					SNP	C	C	T	T	T	C	T	C	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911522	NES10695927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115478362 () rs orientation: forward

Symbol	Name	Function Class
Rr583575	regulatory region 583575	1151 bp distal
Tssr31331	transcription start site region 31331	1543 bp downstream