rs30082404 SNP Detail

Summary

• ID
  rs30082404
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37570654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATGGACT CTAGAGCAAG
  ACAGACACAC TCCAGTCCTG ATTTCGCCAC TTAGAATATC ACTTTAGGCA AGTTAGGTAC
  TTTGTAAAGT AGGGGTAATA ACCATGCCCC ATTCTTGGGG CTGTTAGCTG GACTAAGTAG
  TTATTCCTTG TGGAAAGTTT AGAATAGTAT CAGGAATCTG GAGATTTTCA TACACAGATA
  S
  TACTCTTGCT CTCCATCATC ATAACCCAAC ATAGCCTCTT CCCTCTTAAC CGTAGTATAT
  GAATATAATA GATTAGTGAG TCAGCGTCTG GCTCTCCTAA ACACAGATGT GGAGCCATTT
  GCTCTGATCT ATGCTCCACC TGGGAACTGA GCCCTGAATG TCCACACAGT TGGGTAAAGG
  AAAATGGAGA AACTTAGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46911677	NES10798442	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30082404					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911677	NES10798442	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37570654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Rr575494	regulatory region 575494			612 bp distal
Rr575495	regulatory region 575495			861 bp distal
Rr575496	regulatory region 575496			756 bp distal