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rs30082411 SNP Detail
Summary
  • ID
    rs30082411
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:37571324 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATACCCAGA ACCAATAACA
    ATGCTGAACA TGGTGGTATT TGCTTTTGAT CTCAGCAGAG ACAAAGTAGG AACTCCTGGC
    TCAATAGCCA GCCAATATAG CTGAATTTGA AAACTCCAAA CCATCAAGAG ACTCTGCCTC
    AGAAAGCAAT GCGGATGGGA TGGCTGTAGT AAAGGACATC ACTCAGTACT GATCTTCAGC
    Y
    ATGTGTACAC ATGGACCCAG AAATACAGAG ATCCTGTAGG AACACTGGGA TTGCAAATGC
    ATGCAATCTC ATCCAGCTTT TTAAAATTGG AACAAACACT TTACTAAGTG TTTTCCAGTG
    TCTGTGGAGG GCTGTATGGG GGTGTGCTTA GAACATGAAC AAATACTCTT CTGTAACCTG
    TAAACAGAAA TGTGACCAGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
ss46911686 NES10798384 PERLEGEN MM_PANEL2 f SNP C C C C T C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
rs30082411 SNP C C C C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46911686 NES10798384 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:37571324 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Afg2a AFG2 AAA ATPase homolog A Intron
Noncoding-Transcript-Variant
Rr575494 regulatory region 575494 1282 bp distal
Rr575495 regulatory region 575495 1531 bp distal
Rr575496 regulatory region 575496 1426 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory