GATACCCAGA ACCAATAACA ATGCTGAACA TGGTGGTATT TGCTTTTGAT CTCAGCAGAG ACAAAGTAGG AACTCCTGGC TCAATAGCCA GCCAATATAG CTGAATTTGA AAACTCCAAA CCATCAAGAG ACTCTGCCTC AGAAAGCAAT GCGGATGGGA TGGCTGTAGT AAAGGACATC ACTCAGTACT GATCTTCAGC Y ATGTGTACAC ATGGACCCAG AAATACAGAG ATCCTGTAGG AACACTGGGA TTGCAAATGC ATGCAATCTC ATCCAGCTTT TTAAAATTGG AACAAACACT TTACTAAGTG TTTTCCAGTG TCTGTGGAGG GCTGTATGGG GGTGTGCTTA GAACATGAAC AAATACTCTT CTGTAACCTG TAAACAGAAA TGTGACCAGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46911686 | NES10798384 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | T | C | C | C |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
||||
rs30082411 | SNP | C | C | C | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46911686 | NES10798384 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:37571324 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Afg2a | AFG2 AAA ATPase homolog A | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr575494 | regulatory region 575494 | 1282 bp distal | ||||||
Rr575495 | regulatory region 575495 | 1531 bp distal | ||||||
Rr575496 | regulatory region 575496 | 1426 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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