rs30082691 SNP Detail

Summary

• ID
  rs30082691
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37726764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGCAGA GCTTATGGAG
  GGAAGGAGTA GGGCTTAAAA ACACACAGAG TGCGCATCTG ACACAGAGTT TCCTTTATGT
  CTTTAGATCA CTGTGTCTTC CCCCACCAAC CTTCCCTCTG ACAAGATAAG AAATAATAAT
  AGCAGCAGGA TTTTCTGAAG CGATGACTCA GGCTTGTAAC TGCCCGGCTT TCTTTTCAGT
  R
  GCTGCTTTAT TGAGCCTTTA AGGAAGCAGT TCATTGGAAT TTATCACTTG TTTTTTTTCC
  TCTTAAATCA GCGAGTGGTT CAGGTTATGA GACTTCCCTA GGTTTGTTCT ATCTGCGTTG
  GCATTTCCAC TGGAAATACG GAGTGTGGCC TTTTCTTGTT TGGGTGTCTA ATCCCATTTT
  AAAGGCCCGT CACGCCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45505432	mCV22777392	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss46913141	NES10828263	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A		A	A	G	G	A	A
ss134810646	ENSMUSSNP1058863	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30082691					SNP	G	G	A	A	A	G	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913141	NES10828263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37726764 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	105 bp upstream
Rr406863	regulatory region 406863	within coordinates
Rr575537	regulatory region 575537	within coordinates
Rr575538	regulatory region 575538	1001 bp proximal
Tssr33054	transcription start site region 33054	190 bp upstream