rs30082845 SNP Detail

Summary

• ID
  rs30082845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84351403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGACC TTCCAGGCTA
  GATGGATTGG GGAAGAAGAA AGCTCCTTAG AGCCAATGTT CCAAAGATTC ATATGAACAG
  ACCTCTTCAT CATTAGGTTC TCAAAGGGAA CTAATTAGGG GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGCTG TAAAGGTGTT TATAGCACAG AAAAGTGCAC
  R
  TGTAGGTCTC TTCAAATAGT AGCCTTGGGG CTGTATGTAA TGATGCCCTA GCTCACACCA
  GAGTTTAAAT CATACCATTC CTGTGATCCC AGGATCAGAC ACTAGATGGC ACCACATTCT
  CCCCTGATGC TGAACCACAT ACCTCCTAAC AGAAAAAATT CAGTAGCTTG AGCAGCCTTG
  GATTTTTTTC CTGATGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47912025	NES11942582	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G		G	G	G	G
ss323369361	CHEV_10_83978284	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30082845					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912025	NES11942582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84351403 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	within coordinates
Gm34405	predicted gene, 34405	within coordinates
Rr217061	regulatory region 217061	1003 bp distal
Rr217062	regulatory region 217062	within coordinates
Rr229121	regulatory region 229121	within coordinates
Rr230499	regulatory region 230499	1035 bp distal
Tssr94890	transcription start site region 94890	1171 bp upstream