rs30082853 SNP Detail

Summary

• ID
  rs30082853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84351631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGTATG TAATGATGCC
  CTAGCTCACA CCAGAGTTTA AATCATACCA TTCCTGTGAT CCCAGGATCA GACACTAGAT
  GGCACCACAT TCTCCCCTGA TGCTGAACCA CATACCTCCT AACAGAAAAA ATTCAGTAGC
  TTGAGCAGCC TTGGATTTTT TTCCTGATGG GTCTGTACCA TCTCAAGGTG AAGAGACTTC
  R
  TCCACTTCAT ATCAATAAGT AAGGGGGTGC TGTGTGTCAG TCTCTGGTGG GAACAGAGGC
  TTGGTTCAGA CAAAAGCCAC TCACCTCCCC CCACCCCCAG GGATACGGCC AATCTCTACC
  CCTCCTCCTC ACCTATACAG CCCTCCTCCA TTCTCCCCAA CCCTCCAGCC CTCCTCCCCA
  GCCCTCCTCC ATTCTCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47912033	NES11942588	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30082853					SNP	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912033	NES11942588	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84351631 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	within coordinates
Gm34405	predicted gene, 34405	within coordinates
Rr217061	regulatory region 217061	1231 bp distal
Rr217062	regulatory region 217062	within coordinates
Rr229121	regulatory region 229121	within coordinates
Rr230499	regulatory region 230499	1263 bp distal
Tssr94890	transcription start site region 94890	943 bp upstream