rs30083349 SNP Detail

Summary

• ID
  rs30083349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37740303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCA ATCTAACCCC TCCTTTAAAT
  R
  ACCCTGGGAT TGTTGACTTT TGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46913429	NES10827219	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G		G	G		G	G		A
ss134811068	ENSMUSSNP6384479	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				A
ss320711759	CHEV_3_37585076	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30083349					SNP	A	A	A	G	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913429	NES10827219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37740303 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	878 bp downstream
Rr575540	regulatory region 575540	625 bp proximal
Rr575541	regulatory region 575541	996 bp proximal
Rr575542	regulatory region 575542	1098 bp proximal
Rr575543	regulatory region 575543	1578 bp proximal