rs30083420 SNP Detail

Summary

• ID
  rs30083420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115507133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAACAA AAGAGAAATG
  AAGTTAGAAA GAGAGGTAGA AAAAACAATT TACCCAGACT CTGAGGAGAC AAAACCTTCC
  CTTGGGTCAC TAAATCCACC AAGATGGAAA TGAGAGCCAC CCATTCTAGT TTTCGAGCCC
  ACGCCATTTC CACTGGCATT GCCACGTTCA GTGTCCAGCC CTGAGATTCC TTCAAGCGAA
  R
  ATCGACTGCT TGCTCACAGA AGGCACCAAC TGCCCATTCT GGGTGCAGGG CAGACATGCA
  TACCCCAACA CACACACACA CACACACACA CACACACACC TCGAAGAGAC CAGCCCACCT
  TCTCATTACC ATGCCAAAAA AAAAGTAGCT TTGTAGGAGG TCATTTGACA AGTAAGCCGT
  TTTCTGGGCT CTATTAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46912005	NES10694512	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30083420					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912005	NES10694512	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115507133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	933 bp distal
Cpgi13725	CpG island 13725	1160 bp proximal
Gm9889	predicted gene 9889	1539 bp upstream
Rr583584	regulatory region 583584	474 bp distal
Rr583585	regulatory region 583585	1049 bp proximal
Rr583586	regulatory region 583586	1578 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	1672 bp upstream
Tssr35273	transcription start site region 35273	930 bp upstream
Tssr35274	transcription start site region 35274	871 bp upstream
Tssr35275	transcription start site region 35275	617 bp upstream
Tssr35276	transcription start site region 35276	233 bp downstream
Tssr35277	transcription start site region 35277	309 bp downstream
Tssr35278	transcription start site region 35278	1296 bp downstream
Tssr35279	transcription start site region 35279	1318 bp downstream
Tssr35280	transcription start site region 35280	1370 bp downstream
Tssr35281	transcription start site region 35281	1405 bp downstream
Tssr35282	transcription start site region 35282	1449 bp downstream
Tssr35283	transcription start site region 35283	1547 bp downstream