rs30083422 SNP Detail

Summary

• ID
  rs30083422
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115507978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTCCTC TCAACAGAAC
  TAGCAATCCC TAAAGGGCAC ACAGCACTAC TTAAGTTGGA CACACAGCAC TAAATAAGTA
  CTCTAAAGTC TGCACAGTAA TTGATCAACT CTATAACAAA TGAGGGGGGA GGGGACCCTA
  GAGACATTGT AGTCATTTCT GTGACAAAAG CTTACGAAAC TCAACATTTC TCCACTCTTA
  W
  CGCTACAGTC CATTCTCAGG CAATGGAAAT TATTGGCGTG GTGCCTGATA ATTTTGTCTA
  CAGGATTTCA AAAAAAAAAA AATAATAATA ATAAGCGTCT TCCCTTTTCT CCGTTCTAAT
  GAATCACAGC TTCTCTAGCA TGCCCTCCCC CAGTCGTTTC TATAATTTGG AAATTAATCT
  TTTTTTTTTT CTAACTTCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46912008	NES10694513	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30083422					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912008	NES10694513	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115507978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	1778 bp distal
Cpgi13725	CpG island 13725	315 bp proximal
Gm9889	predicted gene 9889	694 bp upstream
Rr397956	regulatory region 397956	1603 bp upstream
Rr583584	regulatory region 583584	1319 bp distal
Rr583585	regulatory region 583585	204 bp proximal
Rr583586	regulatory region 583586	733 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	827 bp upstream
Tssr35273	transcription start site region 35273	1775 bp upstream
Tssr35274	transcription start site region 35274	1716 bp upstream
Tssr35275	transcription start site region 35275	1462 bp upstream
Tssr35276	transcription start site region 35276	582 bp upstream
Tssr35277	transcription start site region 35277	523 bp upstream
Tssr35278	transcription start site region 35278	451 bp downstream
Tssr35279	transcription start site region 35279	473 bp downstream
Tssr35280	transcription start site region 35280	525 bp downstream
Tssr35281	transcription start site region 35281	560 bp downstream
Tssr35282	transcription start site region 35282	604 bp downstream
Tssr35283	transcription start site region 35283	702 bp downstream