rs30083696 SNP Detail

Summary

• ID
  rs30083696
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37726865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCAACC TTCCCTCTGA
  CAAGATAAGA AATAATAATA GCAGCAGGAT TTTCTGAAGC GATGACTCAG GCTTGTAACT
  GCCCGGCTTT CTTTTCAGTA GCTGCTTTAT TGAGCCTTTA AGGAAGCAGT TCATTGGAAT
  TTATCACTTG TTTTTTTTCC TCTTAAATCA GCGAGTGGTT CAGGTTATGA GACTTCCCTA
  S
  GTTTGTTCTA TCTGCGTTGG CATTTCCACT GGAAATACGG AGTGTGGCCT TTTCTTGTTT
  GGGTGTCTAA TCCCATTTTA AAGGCCCGTC ACGCCCCTGC TGAGGGTCAG CACCCTGTGA
  ATAGACGCCT CTGCACCTGC TCGCCTATTC TCTGTCCTTC TCCTCTGAGG AGAACGAGAG
  GATGTTCCGG ATGGCAAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45564375	mCV22777394	ABI	CRAMUS_MOUSE	f	SNP		C	G					G		G
ss46913147	NES10828265	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		G	G	G	G	G	C	C	G	G
ss134810652	ENSMUSSNP2925274	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30083696					SNP	C	C	G	G	G	C	G	G	G	G	G	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913147	NES10828265	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37726865 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	4 bp upstream
Rr406863	regulatory region 406863	within coordinates
Rr575537	regulatory region 575537	within coordinates
Rr575538	regulatory region 575538	900 bp proximal
Tssr33054	transcription start site region 33054	291 bp upstream