rs30083759 SNP Detail

Summary

• ID
  rs30083759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84352307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCAGAG CAGCACAGCC
  TGTCAGACCA GCACCCTCAT CCAGTGTCCT CCATCCTGAC CTTATAATTC TACCTCGGAA
  CTCCTCTCCC CATGAGAGCC AATTAAGAAA ATGAGAGGTT GGAACTTTCT AAATATCGGT
  GTTTCTAAGA CTGACTCCAT GCGAGCACAT GGCCTAAGAC AGGGGAAGCT GCACCCAGTG
  Y
  GCAACCATCA CTTTCCACAG AACATGACCA AGTACCCCAG CACAGGTGGC TCTGCCCTCA
  CCACAGGCCC ATTGCCCAAT CGGCCTTGCT CAGGGTGTCA GGAACCAACA CGCTCGCCTG
  GCACAGCCTA GAGGAAGTGC CACACCTTTT GCAGCAGCTC TGATCCTTCA CTTGCTGCCC
  GGCGCTTCCA ATCGTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47912039	NES11942591	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T		C	T	T	C
ss323369365	CHEV_10_83979188	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30083759					SNP	T	T	T	C	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912039	NES11942591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84352307 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	within coordinates
Gm34405	predicted gene, 34405	within coordinates
Rr217061	regulatory region 217061	1907 bp distal
Rr217062	regulatory region 217062	507 bp distal
Rr229121	regulatory region 229121	within coordinates
Rr229122	regulatory region 229122	1694 bp proximal
Rr230499	regulatory region 230499	1939 bp distal
Tssr3295	transcription start site region 3295	1328 bp upstream
Tssr94890	transcription start site region 94890	267 bp upstream
Tssr94891	transcription start site region 94891	1544 bp upstream