rs30084559 SNP Detail

Summary

• ID
  rs30084559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84353476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGTAGAG CTCCAAGTAA
  GCTCAGCCTG CTTTCTTATA GAGCTCTAAG TAAATACAAG TGTTCTTTGC TTAGCACAGC
  ACAGTTAGAC ACTGATGTAC TCACTAACTG AAAAATACAT AGGTGAATAG AGTTTTGCTT
  TCAGTCTTCC ATTTTTATAG CACATCATTG GGAGGGGGGG ACTTGGTTCA CCACTTACTA
  Y
  GACCAGGAAA TGTTCTGAAC AAAGTACTTA GCCTCCTTGG AGCCTTCACC TATCAAGAAA
  CGGGGCAGGG TGGGGCAGGG TGGGTTGCTA AACATAGTGC CTCCCTGTGT GGCTGTCATA
  AAGCCTTTAG AAGAATGACT GTGCATACTC AGTACTCAGG AAGTGTTAGT TACTTGGTAC
  GCCTCCTAGA ACCAAGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47912049	NES11942596	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T		T	T	T	T		T
ss323369369	CHEV_10_83980357	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30084559					SNP	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912049	NES11942596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84353476 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	within coordinates
Gm34405	predicted gene, 34405	within coordinates
Rr217062	regulatory region 217062	1676 bp distal
Rr229121	regulatory region 229121	within coordinates
Rr229122	regulatory region 229122	525 bp proximal
Tssr3295	transcription start site region 3295	159 bp upstream
Tssr94890	transcription start site region 94890	897 bp downstream
Tssr94891	transcription start site region 94891	375 bp upstream