rs30084747 SNP Detail

Summary

• ID
  rs30084747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115508185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCATTCT CAGGCAATGG
  AAATTATTGG CGTGGTGCCT GATAATTTTG TCTACAGGAT TTCAAAAAAA AAAAAATAAT
  AATAATAAGC GTCTTCCCTT TTCTCCGTTC TAATGAATCA CAGCTTCTCT AGCATGCCCT
  CCCCCAGTCG TTTCTATAAT TTGGAAATTA ATCTTTTTTT TTTTCTAACT TCATAAACTC
  Y
  GTGCCCCAAG AAGAAGTCAG TCAAGAAGGA CTCCATAGCA TCTTGGTGAT GCCCGGGTTC
  GTTTTGCTTT GTTTTTTCTC AAAGTTTTTG TTTGTTTCGT TTGTGTTTAA AGGTTCGTTC
  TTGACACCTG GACGCCCCAT AGCCGGAGCC TGCGAGGCTC ACAACCCCCT ACCTCGCTCA
  AGCCGGACGA AGCTGCGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46912014	NES10694515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30084747					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912014	NES10694515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115508185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	1985 bp distal
Cpgi13725	CpG island 13725	108 bp proximal
Gm9889	predicted gene 9889	487 bp upstream
Rr397956	regulatory region 397956	1396 bp upstream
Rr583584	regulatory region 583584	1526 bp distal
Rr583585	regulatory region 583585	within coordinates
Rr583586	regulatory region 583586	526 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	620 bp upstream
Tssr35273	transcription start site region 35273	1982 bp upstream
Tssr35274	transcription start site region 35274	1923 bp upstream
Tssr35275	transcription start site region 35275	1669 bp upstream
Tssr35276	transcription start site region 35276	789 bp upstream
Tssr35277	transcription start site region 35277	730 bp upstream
Tssr35278	transcription start site region 35278	244 bp downstream
Tssr35279	transcription start site region 35279	266 bp downstream
Tssr35280	transcription start site region 35280	318 bp downstream
Tssr35281	transcription start site region 35281	353 bp downstream
Tssr35282	transcription start site region 35282	397 bp downstream
Tssr35283	transcription start site region 35283	495 bp downstream