rs30084749 SNP Detail

Summary

• ID
  rs30084749
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115508789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGATCTGG GGCAGAGTGA CTAAAATAAA ACCAAATGAA
  TAGGAGCCCC TCCGCCCCAA CCAGCAGAGA GAAGGGAAGA GAAGGGGCGG AGCCTGGCAG
  S
  TCCTAAATTC TAATTCACAC AGCTTCCCGC AGTCCCCAGC GCGGGACGGA CTCTGAAACT
  AGGCATGGGG ATCCCTGGGA AAACTTTTCT TCGTTAAAAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46912017	NES10694516	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30084749					SNP	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912017	NES10694516	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115508789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	within coordinates
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	792 bp upstream
Rr583585	regulatory region 583585	107 bp distal
Rr583586	regulatory region 583586	within coordinates
Rr583587	regulatory region 583587	1423 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	85 bp upstream
Tssr31332	transcription start site region 31332	16 bp upstream
Tssr35276	transcription start site region 35276	1393 bp upstream
Tssr35277	transcription start site region 35277	1334 bp upstream
Tssr35278	transcription start site region 35278	343 bp upstream
Tssr35279	transcription start site region 35279	327 bp upstream
Tssr35280	transcription start site region 35280	277 bp upstream
Tssr35281	transcription start site region 35281	221 bp upstream
Tssr35282	transcription start site region 35282	193 bp upstream
Tssr35283	transcription start site region 35283	78 bp upstream