rs30084987 SNP Detail

Summary

• ID
  rs30084987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37741271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGGCCG GGCACTCATG
  ACCCTCCTGC ATTTGACTCC TGGGTGCTGA ACTTGCAGAT CATCGCTACT TTGTGGTGTT
  GCTAAGGGTG GGGATGCTAA CCAGACAAGG TCGTGTCTTT ATCCTTTATT CTTTCAGTCT
  CGTATTTGCT CATCCTCGCT GGGATTTCTT TCCTCCAAGT TGGCTTAAGA ATCACAATTA
  R
  AGACAGGAGT GAGGACAAGG TGGGCTTGCT TGCAGCAGAG GGAGCTTCCC TGTCACACTG
  GGGACGTAGG AGCCACAAGG CTCCACTTTG ATGTGGGTCA GTGCCCTGCA CCGAATGCAG
  AGAGAGCTGG GGGCAGGGCG TGGTAATGGA TTCCAGAGAG GGTTGTGCAA GGCAGGCGCA
  CTGCCAACCC AGCGTGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46913447	NES10827103	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30084987					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913447	NES10827103	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37741271 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	within coordinates
Rr575540	regulatory region 575540	within coordinates
Rr575541	regulatory region 575541	28 bp proximal
Rr575542	regulatory region 575542	130 bp proximal
Rr575543	regulatory region 575543	610 bp proximal