rs30085329 SNP Detail

Summary

• ID
  rs30085329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115573458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATCTCT ACAGTCCTAA
  TCCCCTACTC TAGCTCCATT GTATAGCCTG TCAGTGCCTG TGCACATGGG ACATAAATGT
  GAGAATCTGA AGTGACCTTG ACCTGAATCC TCGACCCCAA ATATAACTCA CCTAGCTGAT
  GTGCCATTGA CATCACAGTG TTCCAGGAAT TGTTATTAAA GACTAATTAG GAAGTCAGTT
  R
  CCCTAATGGA ATCACATAGA CCTAAATAAC AAAACAAAAC AAAACCGAAA ACTTAAAAAA
  CAGCCTGACA TCAGACAGAG GAATACCACC ACACCAAACA GGATGTTTCC ATTTATCTTT
  GGGGCAAGTA GAAAAGAATC CATCAGGCTG GAAATGGGAT TCGATCTTAA TGAGCACTTA
  GAGGGGTGGG TTTTTAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46913370	NES10691040	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30085329					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913370	NES10691040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115573458 () rs orientation: forward

Symbol	Name	Function Class
Rr583598	regulatory region 583598	537 bp distal