rs30085486 SNP Detail

Summary

• ID
  rs30085486
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51460597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAGCTCT GGCCTCCAAC CCACCCATCC ACTTTCTTTC
  TAGAGAAAGG CAAACAGGAG CCCAAGGGGA ACCTTGCTGA TGGCAGAGCA CGAGCTGCCT
  S
  CAACTGCGGC TCCAGAGACC CCACACCCTC TCCTGCCCTC TGGCACACAC ATAAGCAATA
  CGAGTAATTT AAATTAGAAA GTGAAAGAGA AACTTAGGGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49597622	NES12925147	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30085486					SNP	C	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49597622	NES12925147	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51460597 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367430	regulatory region 367430			974 bp upstream
Rr576337	regulatory region 576337			within coordinates
Rr576338	regulatory region 576338			1753 bp proximal
Setd7	SET domain containing (lysine methyltransferase) 7			Intron
				Noncoding-Transcript-Variant
Tssr33221	transcription start site region 33221			875 bp downstream
Tssr33222	transcription start site region 33222			896 bp downstream
Tssr33223	transcription start site region 33223			917 bp downstream