rs30085506 SNP Detail

Summary

• ID
  rs30085506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37727453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACTGAA GAAAACTGCA
  CAGAACATAC GACATGCCTT CACCACAGGC GCCTCTAACA TGAGTGGAGG CGTGAAAACA
  GCAGAGTCCT CCAAATGACC ACAGTGGCTA GATATGGCTG CCTGATTCCC AGAGTAAAAC
  TCCAGATTGT TGTACTTCCC AGATCTGAAT AAGCAGTAAT TGGATGGAGA CAATCCGAAC
  Y
  GGTAAAAGAC TTCACGTCCA CACTGCCTGT TTTCTCCTGT TCTGTGGACA TAGCTCGTGG
  CCCATGCTGA TGCTTGCCTG TAACCCCTGA TCATGGAGAG TAGAGAATTT CACAGGCAGA
  TTTGAACCCG TGACTTGTCA CATGAGCCAA ACTCATGACC AAAGTGATAA AAACATAAAG
  TTCAGGGCCC AACTGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46913168	NES10828276	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30085506					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913168	NES10828276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37727453 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	within coordinates
Rr406863	regulatory region 406863	within coordinates
Rr575537	regulatory region 575537	within coordinates
Rr575538	regulatory region 575538	312 bp proximal
Rr575539	regulatory region 575539	1671 bp proximal
Tssr33054	transcription start site region 33054	879 bp upstream