rs30085806 SNP Detail

Summary

• ID
  rs30085806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37742000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GCAGTACTTG GTTTGACTTG
  Y
  GTTTCCTGAC ACGGCTTTGG TCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46913456	NES10827107	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	C	C	C	T	T		T	T	C		C
ss134811101	ENSMUSSNP5463068	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					C
ss320711765	CHEV_3_37586773	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30085806					SNP	C	C	C	T	C	C	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913456	NES10827107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37742000 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	109 bp upstream
Rr575540	regulatory region 575540	600 bp distal
Rr575541	regulatory region 575541	680 bp distal
Rr575542	regulatory region 575542	120 bp distal
Rr575543	regulatory region 575543	within coordinates