rs30085809 SNP Detail

Summary

• ID
  rs30085809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37742056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCTCATTC ACGCTGTGCA GGCAGCAGTA CTTGGTTTGA
  CTTGTGTTTC CTGACACGGC TTTGGTCCTA AGTTCTTTCC TCTGTCCAAA CTTAACCACG
  Y
  ATCAGAGGAT GACCTTGAAC ATGTGATCTT GCTTCCCTTC CGAGTGCTGG ACATCCAGTC
  AGCACTAAGC CAGGTTTAAT GCCTTGATTA TTAATTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46913459	NES10827109	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C		C	C		C
ss320711766	CHEV_3_37586829	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30085809					SNP	C	T	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913459	NES10827109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37742056 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	165 bp upstream
Rr575540	regulatory region 575540	656 bp distal
Rr575541	regulatory region 575541	736 bp distal
Rr575542	regulatory region 575542	176 bp distal
Rr575543	regulatory region 575543	within coordinates