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rs30086157 SNP Detail
Summary
  • ID
    rs30086157
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:51342298 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CAAACTCATT TTTAAAATTT AATTCAGTGA TTTGTTGTGG
    AAAACTAAGT ATGTCAGGTT ACCTTTTCAT TTTGTAAAGT GTATGCTAAG GCGCTAAAGA
    K
    TTTCAGCAGT TATGAGCACT TGCTGTTCTT CCAGAAGACC CAGGTTTGAT TCTCAGCACC
    CACATGGTAG CTTTATAACC ATTTTAAAAT CCAGTTCTAG                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss49598123 NES12917434 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T G T G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs30086157 SNP T T T T T T T T T G T G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49598123 NES12917434 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:51342298 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Naa15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit Intron
Noncoding-Transcript-Variant
Rr576318 regulatory region 576318 772 bp distal
Rr576319 regulatory region 576319 345 bp distal
Rr576320 regulatory region 576320 107 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory