rs30086159 SNP Detail

Summary

• ID
  rs30086159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51342118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGTCTC CAGATGCACC
  AGTAGAGGGC GTCAGATCTC ATTACGGGTG GTTGTGAGCC ACCATGTGGT TGCTGGAAAT
  TGAACTCACG ACCTTCGGAA GAGCAGTCGG TGCTCTTACC CACTGAGCCA TCTCTCCAGC
  CCAGATTTTA AATTTTTAAC TGACATAGAA AACAGGACAA ATAGAACACA TGACATTAAT
  Y
  TCATACTAAG GAAATCCTTA TTCCCAATTT TGAAATTGCA AAAATTCCTG AAACACAGTG
  GTTTCTGGGT AAGGAATTGC AAACTCATTT TTAAAATTTA ATTCAGTGAT TTGTTGTGGA
  AAACTAAGTA TGTCAGGTTA CCTTTTCATT TTGTAAAGTG TATGCTAAGG CGCTAAAGAT
  TTTCAGCAGT TATGAGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49598125	NES12917429	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30086159					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598125	NES12917429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51342118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			592 bp distal
Rr576319	regulatory region 576319			165 bp distal
Rr576320	regulatory region 576320			287 bp proximal