rs30086162 SNP Detail

Summary

• ID
  rs30086162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGAGCCA CTAGCGTTAA CGAATTTTTT TTTTTCTCTA
  GGTGTTTAGT GCCTGAGCAC CTGTAGGCTT GTGCTGCTCT GTAGCTGTTC TGGGTTAAGT
  Y
  AAGTCTGGTG TGGGCCTTCC CCAGTTTAAT CTTTTTTTGT TTTTGTTTTT CTTTTTGTTT
  GTTTTTTCGA GACAGGGTTT CTCTGTGTAG CCCTGGCTGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598128	NES12917459	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30086162					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598128	NES12917459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340936 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			569 bp proximal
Rr576319	regulatory region 576319			996 bp proximal
Rr576320	regulatory region 576320			1469 bp proximal