rs30086163 SNP Detail

Summary

• ID
  rs30086163
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAAGTC TTTGCTGCCT
  CTGTCTTCAT ATCTATTTTT ATATTGCCAT TAATTTGTTA ATCCTATAGG CCCTGGGTCA
  CTTTCCATCT AGTAGCATTG TCTTTTCTTC GTAACTTAGA TACAGTAGAC AGTTGAGTGA
  GTGGATCCTG CTGCCTTTAT TAACAGAATT TTGTCTTGGT GGGCAATTGG GCTGCATTAG
  M
  ATGTTCTTTT CATGATTACT TTTATTTTTA AACTTAGAAA AAAAATTTTT GTGTGTAGCT
  CTGGGCATCC TGGAACTAGC TCAATAGACC AGGCTGGCCT TAAACAACTT TTTTCAGTCT
  TTCGAGGCAG GGTTTCCCCG TGTAGCCTTG TTTTGGAGCT CACTCTGTAG AACAGACTGG
  ATTTGAACTC AGAGATCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49598133	NES12917476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30086163					SNP	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598133	NES12917476	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340328 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			1177 bp proximal
Rr576319	regulatory region 576319			1604 bp proximal